Liposome (vesicle) formation. The movie shows a cross section of the system visualizing the formation of a double layer. Water has been removed from the...
Dissipative Particle Dynamics (DPD) simulation of liposome formation. One lipid molecule has been tagged to better illustrate lipid dynamics during the self-assembly process. References: 1....
MD simulation of a cholesterol containing (20%) lipid bilayer (DPPC) with explicit water (SPC). As the visualization goes on, water is removed for clarity and...
Molecular Dynamics simulation of ethanol interacting with a lipid (DPPC) membrane. It is clearly visible how the the ethanol molecules penetrate the membrane and hydrogen...
Molecular dynamics simulations of Xenon (150 molecules), water (SPC model) and 128 DPPC lipids. Water has been removed from the visualization for clarity. Xenon is,...
Molecular Dynamics simulations of the enzyme Catechol-O-Methyl Transferase Catechol-O-methyltransferase (COMT) is an enzyme responsible for the inactivation, for example, catecholamine neurotransmitters, including dopamine, epinephrine and...
CPK model of cholesterol. Both the rough side and the smooth side are easily recognizable. References (more & downloadable material at www.softsimu.org) 1. Lessons of...
A movie showing how ethanol forms hydrogen bonds with (POPC) lipids. Snapshot from a molecular dynamics simulations of ethanol, water and 128 POPC lipids. Water...